PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.21102s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 339aa    MW: 39620.6 Da    PI: 4.3756
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.21102s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix446e-1495179286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W +qe  +L+e+  ++  +l+r++l+  +W ev++k+ +e  +e+s +qC+  ++nl+++y+k+k   +k +   ss++++f++l+
  Cagra.21102s0003.1.p  95 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVcEELRMEKSETQCRRMIDNLKRKYRKEKIKVEK-SGLGSSKWAFFNKLD 179
                           **********************************9877999***********************977776.478999*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-1994180No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGDSEDETGY PKKFYSLNRQ SHPMYSRPIP KRHAYYHEEE DEQEEDEVEG DDEEPQGGGY  60
SRGNERFQKR QKPNKPVVSG YDFAGPSDGK VKYDWREQEA FVLLEVWGDR FLQLGRRSLR  120
NEDWNEVAEK VCEELRMEKS ETQCRRMIDN LKRKYRKEKI KVEKSGLGSS KWAFFNKLDM  180
LLCVSPKSDL GLACGVDSGE FVFMNTKVYL DKSNGFDEMM DSPGDSEEEE DDEEEVDYER  240
KKFNDAASYK MLADSVEKFG KIYEKMEKSK KEQMKELEKM RADFQKDLEL QKKQIVDRAQ  300
SEIARLREEE ENNHGDAGDD ESEDEEMEND SDVNLSDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207460.0AB020746.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298066.10.0hypothetical protein CARUB_v10014110mg
TrEMBLR0HMM00.0R0HMM0_9BRAS; Uncharacterized protein
STRINGscaffold_302996.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-168Trihelix family protein